Michael Zilliox, PhD

Public Health Sciences

Assistant Professor
Director, Sequencing Core

Languages Spoken



  • The female urinary microbiome in urgency urinary incontinence Pearce, M. M.; Zilliox, M. J.; Rosenfeld, A. B.; Thomas-White, K. J.; Richter, H. E.; Nager, C. W.; Visco, A. G.; Nygaard, I. E.; Barber, M. D.; Schaffer, J.; Moalli, P.; Sung, V. W.; Smith, A. L.; Rogers, R.; Nolen, T. L.; Wallace, D.; Meikle, S. F.; Gai, X.; Wolfe, A. J.; Brubaker, L.; Pelvic Floor Disorders Network, American Journal of Obstetrics and Gynecology
  • The Female Urinary Microbiome: a Comparison of Women with and without Urgency Urinary Incontinence Pearce, M. M.; Hilt, E. E.; Rosenfeld, A. B.; Zilliox, M. J.; Thomas-White, K.; Fok, C.; Kliethermes, S.; Schreckenberger, P. C.; Brubaker, L.; Gai, X.; Wolfe, A. J., mBio
  • The Gene Expression Barcode 3.0: improved data processing and mining tools McCall, M. N.; Jaffee, H. A.; Zelisko, S. J.; Sinha, N.; Hooiveld, G.; Irizarry, R. A.; Zilliox, M. J., Nucleic acids research
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  • Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladder Hilt, E. E.; McKinley, K.; Pearce, M. M.; Rosenfeld, A. B.; Zilliox, M. J.; Mueller, E. R.; Brubaker, L.; Gai, X.; Wolfe, A. J.; Schreckenberger, P. C., Journal of clinical microbiology
  • ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data Wu, G., Yustein, J.T., McCall, M.N., Zilliox, M.J., Irizarry, R.A. Zeller, K., Dang, C.V. and Ji, H., Bioinformatics (Oxford, England)
  • Comparative analysis of simian immunodeficiency virus gag-specific effector and memory CD8+ T cells induced by different adenovirus vectors Tan, W. G.; Jin, H. T.; West, E. E.; Penaloza-MacMaster, P.; Wieland, A.; Zilliox, M. J.; McElrath, M. J.; Barouch, D. H.; Ahmed, R., Journal of virology
  • Identification of novel markers for mouse CD4(+) T follicular helper cells Iyer, S. S.; Latner, D. R.; Zilliox, M. J.; McCausland, M.; Akondy, R. S.; Penaloza-Macmaster, P.; Hale, J. S.; Ye, L.; Mohammed, A. U.; Yamaguchi, T.; Sakaguchi, S.; Amara, R. R.; Ahmed, R., European journal of immunology
  • Phenotype function, and gene expression profiles of programmed death-1(hi) CD8 T cells in healthy human adults, Duraiswamy, J.; Ibegbu, C. C.; Masopust, D.; Miller, J. D.; Araki, K.; Doho, G. H.; Tata, P.; Gupta, S.; Zilliox, M. J.; Nakaya, H. I.; Pulendran, B.; Haining, W. N.; Freeman, G. J.; Ahmed, R., Journal of immunology (Baltimore, Md.: 1950)
  • The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes McCall, M. N.; Uppal, K.; Jaffee, H. A.; Zilliox, M. J.; Irizarry, R. A., Nucleic acids research
  • A gene expression bar code for microarray data Zilliox, M. J.; Irizarry, R. A., Nature methods
  • Gene expression changes in peripheral blood mononuclear cells during measles virus infection Zilliox, M. J.; Moss, W. J.; Griffin, D. E., Clinical and vaccine immunology : CVI
  • Gene expression patterns in dendritic cells infected with measles virus compared with other pathogens Zilliox, M. J.; Parmigiani, G.; Griffin, D. E., Proceedings of the National Academy of Sciences of the United States of America
  • Adjuvant danger signals increase the immune response to porcine reproductive and respiratory syndrome virus Foss, D. L.; Zilliox, M. J.; Meier, W.; Zuckermann, F.; Murtaugh, M. P., Viral immunology
  • Bacterially induced activation of interleukin-18 in porcine intestinal mucosa Foss, D. L.; Zilliox, M. J.; Murtaugh, M. P., Veterinary immunology and immunopathology
  • Experimental autoimmune myocarditis in A/J mice is an interleukin-4-dependent disease with a Th2 phenotype Afanasyeva, M.; Wang, Y.; Kaya, Z.; Park, S.; Zilliox, M. J.; Schofield, B. H.; Hill, S. L.; Rose, N. R., The American journal of pathology
  • Differential regulation of macrophage interleukin-1 (IL-1) IL-12, and CD80-CD86 by two bacterial toxins, Foss, D.L., Zilliox, M.J., and Murtaugh, M.P., Infection & Immunity
  • In vitro and in vivo bioactivity of single-chain interleukin-12 Foss, D.L, Moody, M.D., Murphy Jr., K.P., Pazmany, C., Zilliox, M.J., and Murtaugh, M.P., Scandinavian journal of immunology
  • Efficient assembly of rat hepatocyte spheroids for tissue engineering applications Wu, F.J., Friend, J.R., Hsiao, C.C., Zilliox, M.J., Ko, W.J., Cerra, F.B., and Hu, W.S., BIOTECHNOLOGY AND BIOENGINEERING