Michael Zilliox
  • Assistant Professor
  • Director, Sequencing Core
  • Public Health Sciences

The Female Urinary Microbiome: a Comparison of Women with and without Urgency Urinary IncontinencePearce,M. M.; Hilt,E. E.; Rosenfeld,A. B.; Zilliox,M. J.; Thomas-White,K.; Fok,C.; Kliethermes,S.; Schreckenberger,P. C.; Brubaker,L.; Gai,X.; Wolfe,A. J.mBio 2014 ;5(4):10.1128/mBio.01283-14

Urine is not sterile: use of enhanced urine culture techniques to detect resident bacterial flora in the adult female bladderHilt,E. E.; McKinley,K.; Pearce,M. M.; Rosenfeld,A. B.; Zilliox,M. J.; Mueller,E. R.; Brubaker,L.; Gai,X.; Wolfe,A. J.; Schreckenberger,P. C.Journal of clinical microbiology 2014 ;52(3):871-876

The Gene Expression Barcode 3.0: improved data processing and mining toolsMcCall,M. N.; Jaffee,H. A.; Zelisko,S. J.; Sinha,N.; Hooiveld,G.; Irizarry,R. A.; Zilliox,M. J.Nucleic acids research 2014 ;42(Database issue):D938-43

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip dataWu, G., Yustein, J.T., McCall, M.N., Zilliox, M.J., Irizarry, R.A. Zeller, K., Dang, C.V. and Ji, H.Bioinformatics (Oxford, England) 2013 ;29( ):1182-1189

Comparative analysis of simian immunodeficiency virus gag-specific effector and memory CD8+ T cells induced by different adenovirus vectorsTan,W. G.; Jin,H. T.; West,E. E.; Penaloza-MacMaster,P.; Wieland,A.; Zilliox,M. J.; McElrath,M. J.; Barouch,D. H.; Ahmed,R.Journal of virology 2013 ;87(3):1359-1372

Identification of novel markers for mouse CD4(+) T follicular helper cellsIyer,S. S.; Latner,D. R.; Zilliox,M. J.; McCausland,M.; Akondy,R. S.; Penaloza-Macmaster,P.; Hale,J. S.; Ye,L.; Mohammed,A. U.; Yamaguchi,T.; Sakaguchi,S.; Amara,R. R.; Ahmed,R.European journal of immunology 2013 ;43(12):3219-3232

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomesMcCall,M. N.; Uppal,K.; Jaffee,H. A.; Zilliox,M. J.; Irizarry,R. A.Nucleic acids research 2011 ;39(Database issue):D1011-5

Phenotype, function, and gene expression profiles of programmed death-1(hi) CD8 T cells in healthy human adultsDuraiswamy,J.; Ibegbu,C. C.; Masopust,D.; Miller,J. D.; Araki,K.; Doho,G. H.; Tata,P.; Gupta,S.; Zilliox,M. J.; Nakaya,H. I.; Pulendran,B.; Haining,W. N.; Freeman,G. J.; Ahmed,R.Journal of immunology (Baltimore, Md.: 1950) 2011 ;186(7):4200-4212

A gene expression bar code for microarray dataZilliox,M. J.; Irizarry,R. A.Nature methods 2007 ;4(11):911-913

Gene expression changes in peripheral blood mononuclear cells during measles virus infectionZilliox,M. J.; Moss,W. J.; Griffin,D. E.Clinical and vaccine immunology : CVI 2007 ;14(7):918-923

Gene expression patterns in dendritic cells infected with measles virus compared with other pathogensZilliox,M. J.; Parmigiani,G.; Griffin,D. E.Proceedings of the National Academy of Sciences of the United States of America 2006 ;103(9):3363-3368

Adjuvant danger signals increase the immune response to porcine reproductive and respiratory syndrome virusFoss,D. L.; Zilliox,M. J.; Meier,W.; Zuckermann,F.; Murtaugh,M. P.Viral immunology 2002 ;15(4):557-566

Experimental autoimmune myocarditis in A/J mice is an interleukin-4-dependent disease with a Th2 phenotypeAfanasyeva,M.; Wang,Y.; Kaya,Z.; Park,S.; Zilliox,M. J.; Schofield,B. H.; Hill,S. L.; Rose,N. R.The American journal of pathology 2001 ;159(1):193-203

Bacterially induced activation of interleukin-18 in porcine intestinal mucosaFoss,D. L.; Zilliox,M. J.; Murtaugh,M. P.Veterinary immunology and immunopathology 2001 ;78(3-4):263-277

Differential regulation of macrophage interleukin-1 (IL-1), IL-12, and CD80-CD86 by two bacterial toxinsFoss, D.L., Zilliox, M.J., and Murtaugh, M.P.Infection & Immunity 1999 ;67( ):5275-5281

In vitro and in vivo bioactivity of single-chain interleukin-12Foss, D.L, Moody, M.D., Murphy Jr., K.P., Pazmany, C., Zilliox, M.J., and Murtaugh, M.P.Scandinavian journal of immunology 1999 ;50( ):596-604

Efficient assembly of rat hepatocyte spheroids for tissue engineering applicationsWu, F.J., Friend, J.R., Hsiao, C.C., Zilliox, M.J., Ko, W.J., Cerra, F.B., and Hu, W.S.BIOTECHNOLOGY AND BIOENGINEERING 1996 ;50( ):404-415